Rebuild the project to include the updated files, package it up ready for deployment, power cycle the Zedboard and deploy via JTAG.
steve@Linux-Steve:/home/steve/projects/petalinux$ petalinux-build
steve@Linux-Steve:/home/steve/projects/petalinux$ petalinux-package --prebuilt --force
steve@Linux-Steve:/home/steve/projects/petalinux$ petalinux-boot --jtag --prebuilt 3